GROMACS
Introduction to molecular dynamics simulation and GROMACS
Basis of molecular dynamics simulations
Alessandra Villa, PDC / KTH, Stockholm, Sweden
https://zenodo.org/records/10017516
Tutorial: GROMACS Protein-Membrane
Introduction to Membrane-Protein Simulation
Farzaneh Jalalypour, PDC / KTH, Stockholm, Sweden
https://tutorials.gromacs.org/membrane-protein.html
Running GROMACS on CPU and GPU
Alessandra Villa, PDC / KTH, Stockholm, Sweden
https://zenodo.org/records/10017683
Tutorial: Running GROMACS on CPU and GPU
Introduction to HPC: molecular dynamics simulations with GROMACS
Cathrine Bergh, PDC / KTH, Stockholm, Sweden
https://hackmd.io/@M6Ldm9LPQ1CAIclMXIVZKA/BkyDpLux6
HADDOCK
Integrative modelling with HADDOCK
Integrative modeling of biomolecular complexes
Alexandre Bonvin, Utrecht University, the Netherlands
https://www.dropbox.com/scl/fi/54w6n9tapuaj4jhmjf27r/2023-10-HADDOCK-BioExcel-Bratislava.pdf?rlkey=fringazzci8o0gdcnbl8aw219&dl=0
Tutorial: HADDOCK
Low-sampling antibody-antigen modelling tutorial using a local version of HADDOCK3
Marco Giulini, Utrecht University, the Netherlands
https://www.bonvinlab.org/education/HADDOCK3/HADDOCK3-antibody-antigen-bioexcel2023/
