| Start date: | 23 January 2025, 12:00 (CET) | |||
| End date: | 23 January 2025, 15:00 (CET) | |||
| Location: | ÖGDV Science Days 2025, Werfenweng, Austria | |||
| Language: | English | |||
| Target audience: | Only for registered ÖGDV Science Days 2025 / SCA workshop participants | |||
| Organizers: | VSC & EuroCC Austria & ÖGDV |
Overview
Single-cell RNA sequencing (scRNA-seq) has become an essential tool in Dermatology, Immunology, and many related fields. However, like in any research area, careful data analysis is key. In this 3-hour introductory workshop, you will gain an understanding of the fundamental principles behind scRNA-seq data analysis. We will cover key steps in the analytical process and discuss the limitations of the method. This hands-on session will provide sample data (individual samples from publication PMID: 33479125) and notebooks for analysis. The analysis approach demonstrated in the notebooks is adaptable for use with other scRNA-seq datasets you may be working with in your own lab.
Hands-on labs
All participants will get a temporary user account on VSC to do the hands-on labs. Access will be possible until the end of the ÖGDV Science Days 2025 (25 January 2025).
You will use your own laptop to connect conveniently from your browser to the VSC Jupyterhub and do the hands-on exercises.
Course Material
Everything needed for doing thehands-on labs will be prepared for the participants directly on the VSC.
GitHub: https://github.com/Mwielscher/OEGDV_scRNAseq
Lecturer
Matthias Wielscher (Department of Dermatology, Medical University of Vienna)
Registration
The registration form is available from the left menu, registration deadline is Tuesday, 21 January 2025m 23:59 CET - we still accept post-deadline registration until the workshop starts.
This workshop is only for registered ÖGDV Science Days 2025 / SCA workshop participants.
This additional registration is necessary to get access to the hands-on labs.
Organizers
This course is jointly organized by the VSC Research Center, TU Wien, EuroCC Austria, and ÖGDV.
Acknowledgements
This course is partially funded by the EuroCC 2 project.
The project has received funding from the European High-Performance Computing Joint Undertaking (JU) under grant agreement No 101101903. The JU receives support from the Digital Europe Programme and Austria, Belgium, Bulgaria, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Lithuania, Luxembourg, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Serbia, Slovakia, Slovenia, Spain, Sweden, and Türkiye.
Additional funding for the project comes from the Austrian federal ministries BMBWF and BMK.
